STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srlRTranscriptional regulator, DeoR family; COG: COG1349; Pfam: PF08220,PF00455; InterPro: IPR014036. (257 aa)    
Predicted Functional Partners:
kdsD3
Sugar isomerase, KpsF/GutQ family; COG: COG0794; Pfam: PF01380,PF00571; InterPro: IPR004800.
  
  
 0.783
gutM
Glucitol operon activator protein GutM; COG: COG4578; Pfam: PF06923; InterPro: IPR009693.
  
  
 0.664
srlA
Glucitol/sorbitol permease IIC component; COG: COG3730; Pfam: PF03608; InterPro: IPR004699.
 
    0.580
pfkB
1-phosphofructokinase; COG: COG1105; Pfam: PF00294; InterPro: IPR011611; Belongs to the carbohydrate kinase PfkB family.
  
  
 0.561
srlD
Sorbitol-6-phosphate 2-dehydrogenase; COG: COG1028; Pfam: PF00106; InterPro: IPR016040; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
    0.534
srlB
PTS system, glucitol/sorbitol-specific, IIA component; COG: COG3731; Pfam: PF03829; InterPro: IPR004716.
 
    0.507
fruA
Phosphotransferase system, EIIC; COG: COG1299; Pfam: PF02379,PF02378; InterPro: IPR006327.
  
  
 0.468
ptsP
Phosphoenolpyruvate-protein phosphotransferase; COG: COG1080; Pfam: PF00381,PF05524,PF00391,PF02896,PF00359; InterPro: IPR006318.
  
  
 0.423
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.