STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srlEPTS system, glucitol/sorbitol-specific, IIBC component; COG: COG3732; Pfam: PF03612,PF07663; InterPro: IPR004702. (329 aa)    
Predicted Functional Partners:
srlB
PTS system, glucitol/sorbitol-specific, IIA component; COG: COG3731; Pfam: PF03829; InterPro: IPR004716.
 
 
 0.998
srlA
Glucitol/sorbitol permease IIC component; COG: COG3730; Pfam: PF03608; InterPro: IPR004699.
 
 
 0.998
srlD
Sorbitol-6-phosphate 2-dehydrogenase; COG: COG1028; Pfam: PF00106; InterPro: IPR016040; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
  0.980
gutM
Glucitol operon activator protein GutM; COG: COG4578; Pfam: PF06923; InterPro: IPR009693.
 
  
 0.951
ptsH
Phosphocarrier protein HPr; COG: COG1925; Pfam: PF00381; InterPro: IPR000032.
    
  0.902
mtlA
PTS system, mannitol-specific IIC component; COG: COG2213; Pfam: PF02378,PF02302,PF00359; InterPro: IPR004718.
 
   
 0.727
mtlD
Mannitol dehydrogenase domain protein; COG: COG0246; Pfam: PF01232,PF08125; InterPro: IPR013118.
  
     0.697
arbF
PTS system, beta-glucoside-specific, IIABC component; COG: COG1263; Pfam: PF00367,PF02378,PF00358; InterPro: IPR011297.
  
  
 0.435
kdsD3
Sugar isomerase, KpsF/GutQ family; COG: COG0794; Pfam: PF01380,PF00571; InterPro: IPR004800.
  
    0.433
levR
Sigma-54 interaction domain protein; Pfam: PF00158,PF00874; InterPro: IPR002078.
  
    0.413
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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