STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfHTranscriptional regulator, GntR family; COG: COG1802; Pfam: PF00392,PF07729; InterPro: IPR011711. (228 aa)    
Predicted Functional Partners:
MtlK
Mannitol dehydrogenase domain protein; COG: COG0246; Pfam: PF01232,PF08125; InterPro: IPR016040; Belongs to the mannitol dehydrogenase family.
   
 0.707
YdfH_5
Transcriptional regulator, GntR family; COG: COG1802; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
     0.680
LutR_6
FCD domain protein; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
  
 0.546
exuR
Transcriptional regulator, GntR family; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
  
 0.540
yieP
FCD domain protein; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
  
 0.527
uxuR
FCD domain protein; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
  
 0.508
dgoR
FCD domain protein; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
  
 0.507
ProP_3
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
       0.485
NadR_1
Nicotinamide-nucleotide adenylyltransferase; COG: COG3172; Pfam: PF01381; InterPro: IPR006417.
   
  
 0.465
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
   
 0.449
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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