STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfJTransporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701. (464 aa)    
Predicted Functional Partners:
ProP_3
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
 
    
0.498
rspA
Starvation-sensing protein RspA; COG: COG4948; Pfam: PF02746,PF01188; InterPro: IPR001354.
  
    0.476
MtlK
Mannitol dehydrogenase domain protein; COG: COG0246; Pfam: PF01232,PF08125; InterPro: IPR016040; Belongs to the mannitol dehydrogenase family.
  
  
 0.471
rspB
GroES-like protein; COG: COG1063; Pfam: PF08240,PF00107; InterPro: IPR002085.
  
    0.437
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.