STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yegQPeptidase, U32 family; COG: COG0826; Pfam: PF01136; InterPro: IPR001539. (450 aa)    
Predicted Functional Partners:
ecs2
Peptidase, U32 family; COG: COG0826; Pfam: PF01136; InterPro: IPR001539.
 
 
 0.738
mdmC
O-methyltransferase; COG: COG4122; Pfam: PF01596; InterPro: IPR002935.
  
  
 0.565
hemN
Coproporphyrinogen dehydrogenase; COG: COG0635; Pfam: PF04055,PF06969; InterPro: IPR004558; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
    0.530
yhbT
SCP-2 sterol transfer family protein; COG: COG3154; Pfam: PF02036; InterPro: IPR003033.
 
  
 0.522
EFE95929.1
Hypothetical protein; COG: COG3422; Pfam: PF07411; InterPro: IPR010879.
       0.461
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
    0.409
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.