STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speGDiamine N-acetyltransferase; COG: COG1670; Pfam: PF00583; InterPro: IPR016181. (183 aa)    
Predicted Functional Partners:
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
    
 0.917
speB
Agmatinase; Catalyzes the formation of putrescine from agmatine. Belongs to the arginase family. Agmatinase subfamily.
     
 0.909
glnA-3
Glutamate--ammonia ligase, catalytic domain protein; COG: COG0174; Pfam: PF00120; InterPro: IPR014746; Belongs to the glutamine synthetase family.
     
 0.903
glnA-4
Glutamate--ammonia ligase, catalytic domain protein; COG: COG0174; Pfam: PF00120; InterPro: IPR014746; Belongs to the glutamine synthetase family.
     
 0.903
speF
Orn/Lys/Arg decarboxylase, major domain protein; COG: COG1982; Pfam: PF03709,PF01276,PF03711; InterPro: IPR000310.
     
 0.901
speF2
Orn/Lys/Arg decarboxylase, major domain protein; COG: COG1982; Pfam: PF03709,PF01276,PF03711; InterPro: IPR000310; overlaps another CDS with the same product name.
     
 0.901
YnfB
Tat pathway signal sequence domain protein; Pfam: PF06932; InterPro: IPR009700; Belongs to the UPF0482 family.
  
  
 0.889
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
  
    0.470
purM
Phosphoribosylformylglycinamidine cyclo-ligase; COG: COG0150; Pfam: PF00586,PF02769; InterPro: IPR004733.
       0.455
IucD
Hypothetical protein; COG: COG3486; 1.14.13.59.
  
  
 0.420
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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