STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcvRGlycine cleavage system transcriptional repressor; COG: COG2716; Pfam: PF01842. (187 aa)    
Predicted Functional Partners:
bcp
Thioredoxin-dependent thiol peroxidase; COG: COG1225; Pfam: PF00578; InterPro: IPR012335.
  
    0.847
EFE93476.1
Hypothetical protein; Pfam: PF07295; InterPro: IPR009912.
  
     0.674
dapX
NlpB/DapX lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
    0.655
rseB
MucB/RseB family protein; COG: COG3026; Pfam: PF03888; InterPro: IPR005588.
  
     0.625
dedD
Sporulation and cell division repeat protein; Non-essential cell division protein that could be required for efficient cell constriction.
  
     0.608
YtfP
AIG2-like family protein; COG: COG2105; Pfam: PF03674; InterPro: IPR005347.
  
     0.607
dapA
Dihydrodipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
    0.606
smg
Hypothetical protein; COG: COG2922; Pfam: PF04361; InterPro: IPR007456; Belongs to the Smg family.
  
    0.595
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
  
 0.577
EFE96776.1
SCP-2 sterol transfer family protein; COG: COG3165; Pfam: PF06843; InterPro: IPR010668.
  
     0.560
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.