STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfeXDyp-type peroxidase family protein; COG: COG2837; Pfam: PF04261; InterPro: IPR006314. (299 aa)    
Predicted Functional Partners:
ycdO
Imelysin; COG: COG2822; Pfam: PF04302; InterPro: IPR007399.
 
  
 0.806
efeU
FTR1 family protein; COG: COG0672; Pfam: PF03239; InterPro: IPR004923.
  
  
 0.648
copC
Copper resistance protein CopC; COG: COG2372; Pfam: PF04234; InterPro: IPR007348.
  
  
 0.596
YfeY_2
Hypothetical protein; Pfam: PF06572; InterPro: IPR010938.
 
    0.586
rumA
23S rRNA (uracil-5-)-methyltransferase RumA; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.
 
      0.546
cysP
Sulfate ABC transporter, sulfate-binding protein; COG: COG4150; Pfam: PF01547; InterPro: IPR005669.
       0.466
cysT
Sulfate ABC transporter, permease protein CysT; Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
       0.466
cysW
Sulfate ABC transporter, permease protein CysW; COG: COG4208; Pfam: PF00528; InterPro: IPR005667.
       0.466
cysA-2
Sulfate ABC transporter, ATP-binding protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
       0.466
YfeZ
Hypothetical protein.
     
 0.425
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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