STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95693.1Hypothetical protein; COG: COG3575; Pfam: PF06042; InterPro: IPR009267. (181 aa)    
Predicted Functional Partners:
DmlR_24
LysR substrate binding domain protein; COG: COG0583; Pfam: PF00126,PF03466; InterPro: IPR005119; Belongs to the LysR transcriptional regulatory family.
       0.628
EFE97638.1
Hypothetical protein.
  
     0.474
nrfG
Tetratricopeptide repeat protein; COG: COG0457; Pfam: PF00515,PF07719; InterPro: IPR011990.
  
     0.471
EFE97640.1
DEAD/DEAH box helicase; COG: COG1205; Pfam: PF00270,PF00271; InterPro: IPR014001.
  
     0.461
GadW
Transcriptional regulator, AraC family; Pfam: PF00165; InterPro: IPR000005.
  
     0.414
fosA
Glutathione transferase FosA; COG: COG0346; Pfam: PF00903; InterPro: IPR004360.
  
     0.407
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.