STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspAspartate racemase; COG: COG1794; Pfam: PF01177; InterPro: IPR004380. (230 aa)    
Predicted Functional Partners:
asnB
Asparagine synthase (glutamine-hydrolyzing); COG: COG0367; Pfam: PF00310,PF00733; InterPro: IPR006426.
    
 0.921
pyrB
Aspartate carbamoyltransferase; COG: COG0540; Pfam: PF02729,PF00185; InterPro: IPR002082; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.917
purA
Adenylosuccinate synthase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
  
  0.912
aspA
Aspartate ammonia-lyase; COG: COG1027; Pfam: PF00206; InterPro: IPR004708.
    
 0.911
ansA
L-asparaginase, type I; COG: COG0252; Pfam: PF00710; InterPro: IPR006033.
    
 0.911
ansA2
L-asparaginase, type II; COG: COG0252; Pfam: PF00710; InterPro: IPR004550; Belongs to the asparaginase 1 family.
    
 0.910
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
     
 0.902
pyrI
Aspartate carbamoyltransferase, regulatory subunit; Involved in allosteric regulation of aspartate carbamoyltransferase.
     
  0.900
argG
Argininosuccinate synthase; COG: COG0137; Pfam: PF00764; InterPro: IPR001518; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
  0.900
asnA
Aspartate--ammonia ligase; COG: COG2502; Pfam: PF03590; InterPro: IPR004618.
     
  0.900
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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