STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95722.1Chloride transporter, ClC family; COG: COG0038; Pfam: PF00654; InterPro: IPR014743. (417 aa)    
Predicted Functional Partners:
vmtV2
Bacterial group 2 Ig-like protein; COG: COG5492; Pfam: PF02368; InterPro: IPR003343.
  
     0.766
ptfA
PTS system fructose IIA component; Pfam: PF03610; InterPro: IPR004701.
  
    0.667
EFE97808.1
Hypothetical protein; COG: COG3811; Belongs to the UPF0386 family.
  
     0.618
EFE95723.1
Hypothetical protein.
       0.572
EFE96603.1
Hypothetical protein; COG: COG5471.
  
     0.532
gutM
Glucitol operon activator protein GutM; COG: COG4578; Pfam: PF06923; InterPro: IPR009693.
  
     0.516
fimI
Fimbrial protein; Pfam: PF00419; InterPro: IPR014779.
  
    0.510
nifJ
Pyruvate synthase; COG: COG0674; Pfam: PF01855,PF01558,PF00037,PF02775; InterPro: IPR011895.
     
 0.491
asoB
Amino acid permease; Pfam: PF00324; InterPro: IPR002293.
  
 
 
 0.486
levR
Sigma-54 interaction domain protein; Pfam: PF00158,PF00874; InterPro: IPR002078.
  
     0.482
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.