STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ypdALytS/YhcK-type transmembrane receptor domain protein; COG: COG3275; Pfam: PF07694,PF01590,PF06580,PF02518; InterPro: IPR003594. (562 aa)    
Predicted Functional Partners:
ypdB
Response regulator receiver domain protein; COG: COG3279; Pfam: PF00072,PF04397; InterPro: IPR001789.
 
 
 0.972
yehT
Response regulator receiver domain protein; COG: COG3279; Pfam: PF00072,PF04397; InterPro: IPR001789.
 
 
 0.883
yhjX
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
 
   
 0.632
dcuR
Response regulator receiver domain protein; COG: COG4565; Pfam: PF00072; InterPro: IPR001789.
 
 
 0.568
EFE95728.1
Hypothetical protein.
       0.562
YcdX
Putative hydrolase; COG: COG1387; Pfam: PF02811; InterPro: IPR004013; Belongs to the PHP family.
  
     0.484
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.