STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YbiUHypothetical protein; Pfam: PF07350; InterPro: IPR010856. (414 aa)    
Predicted Functional Partners:
gltD
Glutamate synthase subunit beta; COG: COG0493; Pfam: PF07992,PF00070; InterPro: IPR006006.
  
  
 0.602
fadH
Pyridine nucleotide-disulfide oxidoreductase; COG: COG1902; Pfam: PF00724,PF07992,PF00070; InterPro: IPR013785.
  
  
 0.602
SpeG_3
Acetyltransferase, GNAT family; COG: COG1670; Pfam: PF00583; InterPro: IPR016181.
       0.591
malM
Maltose operon periplasmic protein precursor (MalM); Pfam: PF07148; InterPro: IPR010794.
  
     0.494
pphA
Ser/Thr phosphatase family protein; COG: COG0639; Pfam: PF00149; InterPro: IPR004843.
  
     0.471
gmr
RNase II stability modulator; COG: COG2202.
  
     0.454
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.