STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95732.1Hypothetical protein. (146 aa)    
Predicted Functional Partners:
aprA
Serralysin; COG: COG2931; Pfam: PF00413,PF08548,PF00353; InterPro: IPR013858.
  
   
 0.617
EFE93957.1
Putative phage DNA packaging protein.
  
     0.550
EFE93959.1
Phage major capsid protein, HK97 family; InterPro: IPR006444.
 
     0.550
EFE97640.1
DEAD/DEAH box helicase; COG: COG1205; Pfam: PF00270,PF00271; InterPro: IPR014001.
 
     0.542
EFE97638.1
Hypothetical protein.
  
     0.527
secM
Secretion monitor precursor protein; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.
  
     0.502
mcrB
ATPase family associated with various cellular activities (AAA); COG: COG1401; Pfam: PF07728; InterPro: IPR011704.
  
     0.494
CwlK
Serine-type D-Ala-D-Ala carboxypeptidase; Pfam: PF02557.
  
     0.424
EFE98315.1
DNA circulation, N-terminal domain protein; Pfam: PF07157; InterPro: IPR009826.
  
     0.422
EFE93495.1
Hypothetical protein; Pfam: PF04865.
 
     0.422
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.