STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scsBCytochrome C biogenesis protein transmembrane region; Pfam: PF02683; InterPro: IPR012335. (678 aa)    
Predicted Functional Partners:
scsD
Antioxidant, AhpC/TSA family; COG: COG0526; Pfam: PF00578; InterPro: IPR012335.
 
 
 0.961
scsC
DsbA-like protein; Pfam: PF01323; InterPro: IPR012335.
 
 
 0.949
EFE95538.1
Hypothetical protein.
     
 0.800
dsbE
Thiol:disulfide interchange protein DsbE; COG: COG0526; Pfam: PF08534; InterPro: IPR004799.
  
 
 0.764
traF
type-F conjugative transfer system pilin assembly protein TraF; InterPro: IPR014110.
  
 
 0.764
msrB
methionine-R-sulfoxide reductase; COG: COG0229; Pfam: PF01641; InterPro: IPR002579; Belongs to the MsrB Met sulfoxide reductase family.
   
 
 0.718
TrbB
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB; InterPro: IPR014109.
  
 
 0.714
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.695
com
DsbA-like protein; COG: COG1651; Pfam: PF01323; InterPro: IPR001853.
 
 
 0.679
dsbA
DsbA-like protein; COG: COG0526; Pfam: PF01323; InterPro: IPR012335.
  
 
 0.622
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.