STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95544.1Hypothetical protein. (143 aa)    
Predicted Functional Partners:
tctA
Membrane protein; COG: COG3333; Pfam: PF01970; InterPro: IPR002823.
 
  
 0.989
EFE95545.1
Hypothetical protein; COG: COG3181; Pfam: PF03401.
 
  
 0.988
tctE
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF08521,PF00672,PF00512,PF02518; InterPro: IPR013727.
 
   
 0.759
EFE95546.1
Hypothetical protein.
       0.533
tctD
Response regulator receiver domain protein; COG: COG0745; Pfam: PF00072,PF00486; InterPro: IPR001789.
 
     0.504
EFE95088.1
Hypothetical protein.
  
     0.489
EFE94462.1
Hypothetical protein.
  
     0.448
abrB
Putative membrane protein AbrB; COG: COG3180; Pfam: PF05145; InterPro: IPR007820.
  
    0.428
recE
Exonuclease; Pfam: PF00929.
  
     0.420
recT
RecT family protein; Pfam: PF03837; InterPro: IPR004590.
  
     0.412
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.