STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hisJLysine-arginine-ornithine-binding periplasmic protein; COG: COG0834; Pfam: PF00497; InterPro: IPR005768; Belongs to the bacterial solute-binding protein 3 family. (260 aa)    
Predicted Functional Partners:
hisQ
ABC transporter, permease protein; COG: COG4215; Pfam: PF00528; InterPro: IPR000515.
 0.981
hisM
Histidine transport system permease protein HisM; COG: COG4160; Pfam: PF00528; InterPro: IPR000515.
 
 0.981
hisP
ABC transporter, ATP-binding protein; COG: COG4598; Pfam: PF00005; InterPro: IPR003593.
 
 
 0.979
glnP-2
Glutamine ABC transporter permease protein; COG: COG0765; Pfam: PF00528; InterPro: IPR000515.
 
 0.889
YecS_3
ABC transporter, permease protein; COG: COG0765; Pfam: PF00528; InterPro: IPR000515.
 
 0.842
yecS
Putative ectoine/hydroxyectoine ABC transporter, permease protein EhuC; COG: COG0765; Pfam: PF00528; InterPro: IPR000515.
 
 0.842
gltK
ABC transporter, permease protein; COG: COG0765; Pfam: PF00528; InterPro: IPR000515.
 
 0.822
glnP
ABC transporter, permease protein; COG: COG0765; Pfam: PF00528; InterPro: IPR000515.
 
 0.814
artQ-2
Arginine ABC transporter permease protein ArtQ; COG: COG4215; Pfam: PF00528; InterPro: IPR000515.
 
 0.813
artM2
ABC transporter, permease protein; COG: COG0765; Pfam: PF00528; InterPro: IPR000515.
 
 0.808
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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