STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sulATIGR01777 family protein; COG: COG1090; Pfam: PF01370,PF08338; InterPro: IPR010099. (302 aa)    
Predicted Functional Partners:
lepB
Signal peptidase I; COG: COG0681; Pfam: PF00717; InterPro: IPR011056; Belongs to the peptidase S26 family.
   
    0.782
folB-2
Dihydroneopterin aldolase; COG: COG1539; Pfam: PF02152; InterPro: IPR006157.
       0.728
EFE93589.1
NAD dependent epimerase/dehydratase family protein; COG: COG0702; Pfam: PF01370; InterPro: IPR016040.
 
    0.710
minE
Putative cell division topological specificity factor MinE; COG: COG0851; Pfam: PF03776.
   
  
 0.678
blc
Lipocalin-like protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.
     0.644
EFE95980.1
Acetyltransferase, GNAT family; COG: COG2388; Pfam: PF00583; InterPro: IPR016181.
  
    0.581
ygiE
Metal cation transporter, ZIP family; Mediates zinc uptake. May also transport other divalent cations; Belongs to the ZIP transporter (TC 2.A.5) family. ZupT subfamily.
  
    0.549
EFE94810.1
3-demethylubiquinone-9 3-methyltransferase domain protein; COG: COG3865; Pfam: PF06983; InterPro: IPR009725.
  
    0.549
EFE94342.1
NAD dependent epimerase/dehydratase family protein; COG: COG2910; Pfam: PF01370; InterPro: IPR016040.
   
    0.547
raiA
Ribosomal subunit interface protein; COG: COG1544; Pfam: PF02482; InterPro: IPR003489.
   
    0.518
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.