STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mutT2Hydrolase, NUDIX family; COG: COG0494; Pfam: PF00293; InterPro: IPR000086. (191 aa)    
Predicted Functional Partners:
yfcE
Phosphodiesterase family protein; COG: COG0622; Pfam: PF00149; InterPro: IPR000979.
  
    0.674
sqs
Phytoene/squalene synthetase; Pfam: PF00494; InterPro: IPR008949.
  
  
 0.589
yfhK
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF00672,PF00512,PF02518; InterPro: IPR003594.
  
 
   0.506
yhjD
Putative ribonuclease; COG: COG1295; Pfam: PF03631; InterPro: IPR005274.
  
     0.497
tmcA
Acetyltransferase, GNAT family; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP).
  
    0.485
rof
Modulator of Rho-dependent transcription termination (ROF); COG: COG4568; Pfam: PF07073; InterPro: IPR009778.
  
     0.446
metM2
Amino acid kinase family; COG: COG0527; Pfam: PF00696; InterPro: IPR001341.
  
    0.442
ubiH
2-polyprenyl-6-methoxyphenol 4-hydroxylase; COG: COG0654; Pfam: PF01266; InterPro: IPR010971.
   
  
 0.433
ubiF
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; COG: COG0654; Pfam: PF01266; InterPro: IPR010971.
   
  
 0.433
EFE94566.1
FAD binding domain protein; COG: COG0654; Pfam: PF01266.
   
  
 0.433
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.