STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfbTHAD hydrolase, family IA, variant 3; COG: COG0637; Pfam: PF00702; InterPro: IPR005834. (225 aa)    
Predicted Functional Partners:
yniC
HAD hydrolase, family IA, variant 3; COG: COG0637; Pfam: PF00702; InterPro: IPR005834.
  
  
0.926
mtlA
PTS system, mannitol-specific IIC component; COG: COG2213; Pfam: PF02378,PF02302,PF00359; InterPro: IPR004718.
  
 
  0.906
mtlD
Mannitol dehydrogenase domain protein; COG: COG0246; Pfam: PF01232,PF08125; InterPro: IPR013118.
    
 0.903
yfbU
YfbU domain protein; COG: COG3013; Pfam: PF03887; InterPro: IPR005587; Belongs to the UPF0304 family.
 
    0.834
yieH
HAD hydrolase, family IA, variant 3; COG: COG0637; Pfam: PF00702; InterPro: IPR005834.
  
   
 0.691
SdcS_2
TrkA C-terminal domain protein; COG: COG0471; Pfam: PF03600,PF02080; InterPro: IPR004680.
  
    0.547
YfbV
Hypothetical protein; COG: COG3092; Pfam: PF04217; InterPro: IPR007334.
       0.534
YbjJ
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
 
      0.409
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.