STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95605.1Hypothetical protein. (107 aa)    
Predicted Functional Partners:
FecA_1
TonB-dependent receptor; COG: COG1629; Pfam: PF07715,PF00593; InterPro: IPR000531.
  
     0.625
IlvB_3
Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein; Pfam: PF02776,PF00205,PF02775; InterPro: IPR012001; Belongs to the TPP enzyme family.
       0.508
EFE98238.1
Hypothetical protein.
  
     0.484
lsc
Levansucrase/Invertase; Pfam: PF02435; InterPro: IPR003469; Belongs to the glycosyl hydrolase 68 family.
  
     0.476
EFE95606.1
Putative membrane protein; Pfam: PF00892.
  
    0.474
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.