STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YcdZHypothetical protein; Pfam: PF06496; InterPro: IPR009476. (167 aa)    
Predicted Functional Partners:
tex
ASCH domain protein; COG: COG3097; Pfam: PF06164; InterPro: IPR008314; Belongs to the UPF0267 family.
  
     0.742
yfbU
YfbU domain protein; COG: COG3013; Pfam: PF03887; InterPro: IPR005587; Belongs to the UPF0304 family.
  
     0.704
YciN
Hypothetical protein.
  
     0.703
YaeP
Hypothetical protein; Pfam: PF06786; InterPro: IPR009624; Belongs to the UPF0253 family.
  
     0.681
dcuC
Transporter, anaerobic C4-dicarboxylate uptake C (DcuC) family; COG: COG3069; Pfam: PF03606; InterPro: IPR004669.
  
     0.670
YijD
Hypothetical protein; Pfam: PF07226; InterPro: IPR009867.
  
     0.660
tyrP
Aromatic amino acid transport protein; COG: COG0814; Pfam: PF03222; InterPro: IPR002091.
  
     0.657
hcr
2Fe-2S iron-sulfur cluster binding domain protein; COG: COG1018; Pfam: PF00970,PF00175,PF00111; InterPro: IPR001041.
  
     0.597
EFE93451.1
Outer membrane porin, OprD family; Pfam: PF03573.
  
     0.582
yfcE
Phosphodiesterase family protein; COG: COG0622; Pfam: PF00149; InterPro: IPR000979.
  
     0.571
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.