STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
elaB-2Protein ElaB; COG: COG4575; Pfam: PF05957; InterPro: IPR010279. (103 aa)    
Predicted Functional Partners:
YqjE
Hypothetical protein; COG: COG5393.
 
  
 0.927
osmE
SmpA / OmlA family protein; Pfam: PF04355; InterPro: IPR007450.
   
    0.740
ftsZ2
PrkA AAA domain protein; COG: COG2766; Pfam: PF08298,PF06798; InterPro: IPR013153.
   
    0.723
dps
Ferritin-like protein; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction; Belongs to the Dps family.
  
    0.704
ygaU
LysM domain protein; COG: COG1652; Pfam: PF04972,PF01476; InterPro: IPR007055.
   
  
 0.681
pcp
Outer membrane lipoprotein pcp; COG: COG3133; Pfam: PF05433; InterPro: IPR008816.
  
    0.569
yjbJ
CsbD-like protein; COG: COG3237; Pfam: PF05532; InterPro: IPR008462; Belongs to the UPF0337 (CsbD) family.
  
  
 0.566
EFE96463.1
Hypothetical protein.
 
    0.543
accB-2
SpoVR family protein; COG: COG2719; Pfam: PF04293; InterPro: IPR007390.
   
    0.543
ompX
Outer membrane protein X; COG: COG3637; Pfam: PF06316; InterPro: IPR000758.
  
     0.536
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.