STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95611.1Glycosyltransferase family 36; COG: COG3459; Pfam: PF06204,PF06165,PF06205; InterPro: IPR010383. (2869 aa)    
Predicted Functional Partners:
EFE98038.1
Putative urate catabolism protein; COG: COG0726; Pfam: PF01522.
  
  
 0.630
IcaB
Polysaccharide deacetylase; COG: COG0726; Pfam: PF01522; InterPro: IPR002509.
  
  
 0.630
pbgP
Polysaccharide deacetylase; Catalyzes the deformylation of 4-deoxy-4-formamido-L- arabinose-phosphoundecaprenol to 4-amino-4-deoxy-L-arabinose- phosphoundecaprenol. The modified arabinose is attached to lipid A and is required for resistance to polymyxin and cationic antimicrobial peptides; Belongs to the polysaccharide deacetylase family. ArnD deformylase subfamily.
  
  
 0.630
EFE97873.1
Creatininase; COG: COG1402; Pfam: PF02633.
  
  
 0.628
BcsB
Bacterial cellulose synthase subunit; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.
  
 
 0.598
sseB
SseB protein; Pfam: PF07179; InterPro: IPR009839.
  
 
 0.598
nrfG
Tetratricopeptide repeat protein; COG: COG0457; Pfam: PF00515,PF07719; InterPro: IPR011990.
  
 
 0.598
EFE94157.1
Tetratricopeptide repeat protein; Pfam: PF07719; InterPro: IPR011990.
  
 
 0.598
arcB
PAS domain S-box protein; COG: COG0642; Pfam: PF00989,PF00512,PF02518,PF00072,PF01627; InterPro: IPR003594.
  
 
 0.595
CsrD
Diguanylate cyclase (GGDEF) domain protein; Pfam: PF00990,PF00563; InterPro: IPR001633.
  
  
 0.564
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.