STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95445.1Hypothetical protein. (114 aa)    
Predicted Functional Partners:
wzzE
Chain length determinant protein; Modulates the polysaccharide chain length of enterobacterial common antigen (ECA); Belongs to the WzzB/Cld/Rol family.
  
     0.774
TomB
Hypothetical protein.
  
     0.772
EFE94080.1
Hypothetical protein; COG: COG5633; Pfam: PF07233; InterPro: IPR010824.
  
     0.772
EFE96463.1
Hypothetical protein.
  
     0.771
EFE94171.1
Hypothetical protein.
  
     0.771
cpxP
Periplasmic repressor CpxP; COG: COG3678; Pfam: PF07813.
  
     0.766
ybgE
Cyd operon protein YbgE; COG: COG3790; InterPro: IPR011846.
  
     0.766
flgM
Flagellar biosynthesis anti-sigma factor FlgM; COG: COG2747; Pfam: PF04316; InterPro: IPR007412.
  
     0.761
yjdC
Transcriptional regulator, TetR family; Pfam: PF00440.
  
     0.757
EFE93700.1
Hypothetical protein; COG: COG1346; Pfam: PF04172; InterPro: IPR007300.
  
     0.756
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.