STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtnCyclic diguanylate phosphodiesterase (EAL) domain protein; COG: COG2200; Pfam: PF00563; InterPro: IPR001633. (531 aa)    
Predicted Functional Partners:
YfiN_2
Diguanylate cyclase (GGDEF) domain protein; COG: COG2199; Pfam: PF00672,PF00990; InterPro: IPR000160.
  
 0.969
speC
Diguanylate cyclase (GGDEF) domain protein; COG: COG2199; Pfam: PF00990; InterPro: IPR000160; overlaps another CDS with the same product name.
  
 0.851
EFE95411.1
Diguanylate cyclase (GGDEF) domain protein; Pfam: PF00990; InterPro: IPR000160.
 
 0.825
YcdT_1
Diguanylate cyclase (GGDEF) domain protein; COG: COG2199; Pfam: PF00990; InterPro: IPR000160.
  
 0.822
Cph2_3
Diguanylate cyclase (GGDEF) domain protein; COG: COG3706; Pfam: PF00990; InterPro: IPR000160.
  
 0.814
YdaM
Diguanylate cyclase (GGDEF) domain protein; COG: COG2199; Pfam: PF05231,PF00990; InterPro: IPR000160.
  
 0.810
EFE95475.1
Diguanylate cyclase (GGDEF) domain protein; Pfam: PF00990; InterPro: IPR000160.
 
  
 0.810
CsrD
Diguanylate cyclase (GGDEF) domain protein; Pfam: PF00990,PF00563; InterPro: IPR001633.
 
  
 0.799
EFE94142.1
Diguanylate cyclase (GGDEF) domain protein; COG: COG2199; Pfam: PF00990; InterPro: IPR000160.
  
 0.798
evgS
Response regulator receiver domain protein; Pfam: PF00512,PF02518,PF00072,PF01627; InterPro: IPR001638.
  
 0.718
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.