STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RutR_1Transcriptional regulator, TetR family; Pfam: PF00440; InterPro: IPR012287. (221 aa)    
Predicted Functional Partners:
rtn
Cyclic diguanylate phosphodiesterase (EAL) domain protein; COG: COG2200; Pfam: PF00563; InterPro: IPR001633.
       0.526
spr
NlpC/P60 family protein; COG: COG0791; Pfam: PF00877; InterPro: IPR000064.
       0.472
yejA
ABC transporter, substrate-binding protein, family 5; COG: COG4166; Pfam: PF00496; InterPro: IPR000914.
       0.429
yejF
Putative phosphonate C-P lyase system protein PhnK; COG: COG4172; Pfam: PF00005; InterPro: IPR003593; Belongs to the ABC transporter superfamily.
       0.426
yejE
ABC transporter, permease protein; COG: COG4239; Pfam: PF00528; InterPro: IPR000515.
       0.426
yejB
ABC transporter, permease protein; COG: COG4174; Pfam: PF00528; InterPro: IPR000515.
       0.426
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.