STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sprNlpC/P60 family protein; COG: COG0791; Pfam: PF00877; InterPro: IPR000064. (191 aa)    
Predicted Functional Partners:
yejA
ABC transporter, substrate-binding protein, family 5; COG: COG4166; Pfam: PF00496; InterPro: IPR000914.
      0.571
EFE95453.1
Hypothetical protein.
       0.564
yeiP
Elongation factor P (EF-P); COG: COG0231; Pfam: PF08207,PF01132,PF09285; InterPro: IPR011897; Belongs to the elongation factor P family.
 
    0.555
RutR_1
Transcriptional regulator, TetR family; Pfam: PF00440; InterPro: IPR012287.
       0.472
yeiR
CobW/P47K family protein; COG: COG0523; Pfam: PF02492,PF07683; InterPro: IPR003495.
 
      0.412
EFE97193.1
AsmA family protein; Pfam: PF05170; InterPro: IPR007844.
  
     0.401
phoQ
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; COG: COG0642; Pfam: PF08918,PF00672,PF00512,PF02518; InterPro: IPR015014.
  
     0.401
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
Server load: medium (60%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.