STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnaBAromatic amino acid transport protein; COG: COG0814; Pfam: PF03222; InterPro: IPR002091. (411 aa)    
Predicted Functional Partners:
trpR
Trp operon repressor; This protein is an aporepressor. When complexed with L- tryptophan it binds the operator region of the trp operon (5'- ACTAGT-'3') and prevents the initiation of transcription. The complex also regulates trp repressor biosynthesis by binding to its regulatory region.
  
   
 0.566
TyrP_1
Transmembrane amino acid transporter protein; COG: COG0814; Pfam: PF01490.
 
     0.498
menC
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.485
yeiP
Elongation factor P (EF-P); COG: COG0231; Pfam: PF08207,PF01132,PF09285; InterPro: IPR011897; Belongs to the elongation factor P family.
       0.471
ygiW
TIGR00156 family protein; COG: COG3111; Pfam: PF04076; InterPro: IPR016052.
  
     0.458
stp-3
Serine transporter; COG: COG0814; InterPro: IPR004694.
  
   
 0.454
stp-2
Serine transporter; COG: COG0814.
  
   
 0.442
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
  
 0.438
tnaA
Tryptophan 2,3-dioxygenase; COG: COG3033; Pfam: PF01212; InterPro: IPR013440; Belongs to the beta-eliminating lyase family.
  
  
 0.426
yfbU
YfbU domain protein; COG: COG3013; Pfam: PF03887; InterPro: IPR005587; Belongs to the UPF0304 family.
  
     0.422
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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