STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DmsA_2Putative dimethyl sulfoxide reductase; COG: COG0243; Pfam: PF00384,PF01568; InterPro: IPR006656; overlaps another CDS with the same product name; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (559 aa)    
Predicted Functional Partners:
DmsA_3
Tat pathway signal sequence domain protein; COG: COG0243; Pfam: PF00384; InterPro: IPR006656; overlaps another CDS with the same product name.
     0.994
torY
Putative trimethylamine-N-oxide reductase c-type cytochrome TorC; COG: COG3005; Pfam: PF03264; InterPro: IPR005126; Belongs to the TorC/TorY family.
 
 0.992
napG
MauM/NapG family ferredoxin-type protein; COG: COG1145; Pfam: PF00037; InterPro: IPR004494.
 
 
 0.797
dmsB
Dimethylsulfoxide reductase, chain B; COG: COG0437; Pfam: PF00037; InterPro: IPR014297.
 
 
 0.777
napC
Periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; COG: COG3005; Pfam: PF03264; InterPro: IPR011885.
 
 
 0.711
dmsD
Cytoplasmic chaperone TorD; Required for biogenesis/assembly of DMSO reductase, but not for the interaction of the DmsA signal peptide with the Tat system. May be part of a chaperone cascade complex that facilitates a folding- maturation pathway for the substrate protein.
 
 
 0.631
gltB
Class II glutamine amidotransferase; COG: COG0069; Pfam: PF00310,PF04898,PF01645,PF01493; InterPro: IPR013785.
  
 
 0.622
nifJ
Pyruvate synthase; COG: COG0674; Pfam: PF01855,PF01558,PF00037,PF02775; InterPro: IPR011895.
  
  
 0.603
napB
Periplasmic nitrate reductase, diheme cytochrome c subunit; Electron transfer subunit of the periplasmic nitrate reductase complex NapAB; Belongs to the NapB family.
 
 
 0.597
fdxH
Formate dehydrogenase, beta subunit; The beta chain is an electron transfer unit containing 4 cysteine clusters involved in the formation of iron-sulfur centers.
  
 
 0.574
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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