STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
DmsA_3Tat pathway signal sequence domain protein; COG: COG0243; Pfam: PF00384; InterPro: IPR006656; overlaps another CDS with the same product name. (257 aa)    
Predicted Functional Partners:
DmsA_2
Putative dimethyl sulfoxide reductase; COG: COG0243; Pfam: PF00384,PF01568; InterPro: IPR006656; overlaps another CDS with the same product name; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     0.994
torY
Putative trimethylamine-N-oxide reductase c-type cytochrome TorC; COG: COG3005; Pfam: PF03264; InterPro: IPR005126; Belongs to the TorC/TorY family.
 
 
 0.944
torA
Molybdopterin guanine dinucleotide-containing S/N-oxide reductase; COG: COG0243; Pfam: PF00384,PF01568; InterPro: IPR006656; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
  
 
0.917
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio-5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon.
     
  0.900
bioF
8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.
     
 0.900
DmsA_9
Anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; COG: COG0243; Pfam: PF00384,PF01568; InterPro: IPR011888; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
     0.835
napG
MauM/NapG family ferredoxin-type protein; COG: COG1145; Pfam: PF00037; InterPro: IPR004494.
 
 
 0.808
dmsB
Dimethylsulfoxide reductase, chain B; COG: COG0437; Pfam: PF00037; InterPro: IPR014297.
 
 
 0.730
napC
Periplasmic nitrate (or nitrite) reductase c-type cytochrome, NapC/NirT family; COG: COG3005; Pfam: PF03264; InterPro: IPR011885.
 
 
 0.721
dmsD
Cytoplasmic chaperone TorD; Required for biogenesis/assembly of DMSO reductase, but not for the interaction of the DmsA signal peptide with the Tat system. May be part of a chaperone cascade complex that facilitates a folding- maturation pathway for the substrate protein.
 
 
 0.673
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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