Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EFE95475.1 | EFE95476.1 | HMPREF0758_2895 | HMPREF0758_2896 | Diguanylate cyclase (GGDEF) domain protein; Pfam: PF00990; InterPro: IPR000160. | Hypothetical protein. | 0.435 |
EFE95476.1 | EFE95475.1 | HMPREF0758_2896 | HMPREF0758_2895 | Hypothetical protein. | Diguanylate cyclase (GGDEF) domain protein; Pfam: PF00990; InterPro: IPR000160. | 0.435 |
EFE95476.1 | hemU | HMPREF0758_2896 | HMPREF0758_2897 | Hypothetical protein. | Gram-positive signal peptide protein, YSIRK family; COG: COG0609; Pfam: PF01032; InterPro: IPR000522; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. | 0.572 |
EFE95476.1 | hemV | HMPREF0758_2896 | HMPREF0758_2898 | Hypothetical protein. | ABC transporter, ATP-binding protein; COG: COG1120; Pfam: PF00005; InterPro: IPR003593. | 0.572 |
hemU | EFE95476.1 | HMPREF0758_2897 | HMPREF0758_2896 | Gram-positive signal peptide protein, YSIRK family; COG: COG0609; Pfam: PF01032; InterPro: IPR000522; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. | Hypothetical protein. | 0.572 |
hemU | hemV | HMPREF0758_2897 | HMPREF0758_2898 | Gram-positive signal peptide protein, YSIRK family; COG: COG0609; Pfam: PF01032; InterPro: IPR000522; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. | ABC transporter, ATP-binding protein; COG: COG1120; Pfam: PF00005; InterPro: IPR003593. | 0.977 |
hemV | EFE95476.1 | HMPREF0758_2898 | HMPREF0758_2896 | ABC transporter, ATP-binding protein; COG: COG1120; Pfam: PF00005; InterPro: IPR003593. | Hypothetical protein. | 0.572 |
hemV | hemU | HMPREF0758_2898 | HMPREF0758_2897 | ABC transporter, ATP-binding protein; COG: COG1120; Pfam: PF00005; InterPro: IPR003593. | Gram-positive signal peptide protein, YSIRK family; COG: COG0609; Pfam: PF01032; InterPro: IPR000522; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. | 0.977 |