STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sbcBExonuclease domain protein; COG: COG2925; Pfam: PF00929,PF08411; InterPro: IPR013620. (453 aa)    
Predicted Functional Partners:
ssb
Single-strand binding protein; COG: COG0629; Pfam: PF00436; InterPro: IPR011344.
    
 
 0.651
rdgC
Recombination associated protein; May be involved in recombination; Belongs to the RdgC family.
  
     0.555
EFE95486.1
Hypothetical protein.
       0.487
Ssb_2
Single-strand binding family protein; Pfam: PF00436; InterPro: IPR012340.
    
 
 0.455
ygdH
Putative lysine decarboxylase; COG: COG1611; Pfam: PF03641; InterPro: IPR005269.
  
     0.408
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.