STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AmiD_1N-acetylmuramoyl-L-alanine amidase; COG: COG3023; Pfam: PF01510,PF01471; InterPro: IPR002502. (255 aa)    
Predicted Functional Partners:
EFE95488.1
Peptidase S24-like protein; COG: COG2932; Pfam: PF00717; InterPro: IPR011056; Belongs to the peptidase S24 family.
  
    0.519
YeeX
Hypothetical protein; COG: COG2926; Pfam: PF04363; InterPro: IPR007458; Belongs to the UPF0265 family.
       0.428
amiB
N-acetylmuramoyl-L-alanine amidase; COG: COG0860; Pfam: PF01520,PF01476; InterPro: IPR002508.
  
  
 0.406
YhcO
Barstar (barnase inhibitor); COG: COG2732; Pfam: PF01337.
  
     0.406
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.