STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95492.1Hypothetical protein; COG: COG2315; Pfam: PF04237; InterPro: IPR007351. (118 aa)    
Predicted Functional Partners:
glnQ2
ABC transporter, ATP-binding protein; COG: COG1126; Pfam: PF00005; InterPro: IPR003593.
       0.520
EFE95491.1
Hypothetical protein.
       0.518
YecS_3
ABC transporter, permease protein; COG: COG0765; Pfam: PF00528; InterPro: IPR000515.
       0.504
EFE96352.1
Secondary thiamine-phosphate synthase enzyme; COG: COG0432; Pfam: PF01894; InterPro: IPR001602.
  
  
 0.446
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.