STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YecS_3ABC transporter, permease protein; COG: COG0765; Pfam: PF00528; InterPro: IPR000515. (280 aa)    
Predicted Functional Partners:
glnQ2
ABC transporter, ATP-binding protein; COG: COG1126; Pfam: PF00005; InterPro: IPR003593.
 0.997
glnH
ABC transporter, substrate-binding protein, family 3; COG: COG0834; Pfam: PF00497; InterPro: IPR001638.
 
 0.936
glnH-2
Glutamine ABC transporter, periplasmic glutamine-binding protein GlnH; COG: COG0834; Pfam: PF00497; InterPro: IPR005768; Belongs to the bacterial solute-binding protein 3 family.
 
 0.914
artJ
Lysine-arginine-ornithine-binding periplasmic protein; COG: COG0834; Pfam: PF00497; InterPro: IPR005768; Belongs to the bacterial solute-binding protein 3 family.
 
 0.899
glnQ
ABC transporter, ATP-binding protein; COG: COG1126; Pfam: PF00005; InterPro: IPR003593.
 
 0.890
FliY_3
ABC transporter, substrate-binding protein, family 3; COG: COG0834; Pfam: PF00497; InterPro: IPR001638.
 
 
 0.888
artP
ABC transporter, ATP-binding protein; COG: COG1126; Pfam: PF00005; InterPro: IPR003593.
 
 0.879
gltL
ABC transporter, ATP-binding protein; COG: COG1126; Pfam: PF00005; InterPro: IPR003593.
 
 0.879
artJ2
Lysine-arginine-ornithine-binding periplasmic protein; COG: COG0834; Pfam: PF00497; InterPro: IPR005768; Belongs to the bacterial solute-binding protein 3 family.
 
 0.876
glnQ-2
Glutamine ABC transporter, ATP-binding protein GlnQ; COG: COG1126; Pfam: PF00005; InterPro: IPR003593.
 
 0.875
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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