STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95495.1Acetyltransferase, GNAT family; Pfam: PF00583; InterPro: IPR016181. (167 aa)    
Predicted Functional Partners:
FliY_3
ABC transporter, substrate-binding protein, family 3; COG: COG0834; Pfam: PF00497; InterPro: IPR001638.
 
     0.921
YecS_3
ABC transporter, permease protein; COG: COG0765; Pfam: PF00528; InterPro: IPR000515.
     0.792
hipO
Amidohydrolase; COG: COG1473; Pfam: PF01546,PF07687; InterPro: IPR010168.
      0.689
ssuE
FMN reductase; COG: COG0431; Pfam: PF03358; InterPro: IPR005025.
 
    0.638
ntaA
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family; COG: COG2141; InterPro: IPR011251.
 
     0.630
glnQ2
ABC transporter, ATP-binding protein; COG: COG1126; Pfam: PF00005; InterPro: IPR003593.
 
     0.602
LuxA_1
Luciferase family oxidoreductase, FMN-dependent, PP_0088 family; COG: COG2141; Pfam: PF00296; InterPro: IPR011251.
 
     0.462
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.