STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95236.1ThiF family protein; Pfam: PF00899; InterPro: IPR016040. (538 aa)    
Predicted Functional Partners:
EFE95234.1
Hypothetical protein; Pfam: PF01734; InterPro: IPR002641.
 
     0.948
thiS
Thiamine biosynthesis protein ThiS; COG: COG2104; Pfam: PF02597; InterPro: IPR012675.
  
 
 0.822
EFE95235.1
Hypothetical protein.
       0.794
EFE97442.1
Hypothetical protein; Pfam: PF02463; InterPro: IPR003395.
  
     0.764
traC
type-IV secretion system protein TraC; InterPro: IPR014117.
  
     0.710
thiG
Thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
  
 0.702
moaE
Molybdopterin converting factor, subunit 2; COG: COG0314; Pfam: PF02391; InterPro: IPR003448.
  
 0.680
moaD
Molybdopterin converting factor, subunit 1; COG: COG1977; Pfam: PF02597; InterPro: IPR012675.
  
 
 0.678
EFE95608.1
Transporter, major facilitator family protein; Pfam: PF07690; InterPro: IPR011701.
  
     0.677
traD
Type IV conjugative transfer system coupling protein TraD; InterPro: IPR014128.
  
     0.650
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.