STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YedY_3Oxidoreductase molybdopterin binding domain protein; COG: COG2041; Pfam: PF00174; InterPro: IPR000572. (253 aa)    
Predicted Functional Partners:
EFE95249.1
Hypothetical protein; COG: COG4117; 1.2.1.2.
 
    0.948
msrQ
Ferric reductase like transmembrane component; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalyti [...]
 
  
 0.849
EFE96585.1
Hypothetical protein; COG: COG4117; 1.2.1.2.
 
    0.780
EFE95250.1
Hypothetical protein.
       0.760
EFE96583.1
Pentapeptide MXKDX repeat protein; InterPro: IPR014299.
 
     0.687
irlS
Heavy metal sensor kinase; Member of a two-component regulatory system.
  
  
 0.522
irlR
Heavy metal response regulator; COG: COG0745; Pfam: PF00072,PF00486; InterPro: IPR006291.
       0.514
moaE
Molybdopterin converting factor, subunit 2; COG: COG0314; Pfam: PF02391; InterPro: IPR003448.
 
   
 0.497
AdhB_2
COG: COG1529; Pfam: PF02738,PF00034; InterPro: IPR008274.
 
 
 0.464
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.