STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95254.1Hypothetical protein; Pfam: PF07676; overlaps another CDS with the same product name; 4.2.2.6. (171 aa)    
Predicted Functional Partners:
ogl2
Putative oligogalacturonide lyase; Overlaps another CDS with the same product name.
      0.960
EFE98263.1
Hypothetical protein.
 
    0.683
ompA3
OmpA-like transmembrane domain protein; COG: COG2885; Pfam: PF01389,PF00691; InterPro: IPR000498; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 
 0.672
ompA4
Tat pathway signal sequence domain protein; COG: COG2885; Pfam: PF01389,PF00691; InterPro: IPR000498; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
  
 
 0.672
pelX
Putative pectate disaccharide-lyase; InterPro: IPR012334.
 
     0.599
ygbF
Tol-pal system protein YbgF; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
  
 0.576
MelB
Hypothetical protein; COG: COG2211.
 
     0.561
LacY_2
oligosaccharide:H+ symporter; Pfam: PF01306; InterPro: IPR000576.
  
     0.537
EFE97102.1
Caudovirales tail fiber assembly protein; Pfam: PF02413; InterPro: IPR003458.
  
     0.488
EFE94158.1
Hypothetical protein.
  
     0.468
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.