STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RipA_6AraC-like ligand binding domain protein; COG: COG2207; Pfam: PF02311. (259 aa)    
Predicted Functional Partners:
EFE95268.1
Transporter, major facilitator family protein; COG: COG0477; Pfam: PF07690; InterPro: IPR011701.
     
 0.727
NadR_1
Nicotinamide-nucleotide adenylyltransferase; COG: COG3172; Pfam: PF01381; InterPro: IPR006417.
   
  
 0.560
EFE95267.1
Hypothetical protein.
       0.534
EFE95266.1
Hypothetical protein.
     
 0.515
EFE95270.1
Hypothetical protein.
       0.508
RipA_2
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF00165; InterPro: IPR000005.
 
 
0.498
flgG
Flagellar basal-body rod protein FlgG; COG: COG4786; Pfam: PF00460,PF06429; InterPro: IPR012834; Belongs to the flagella basal body rod proteins family.
    
   0.465
RipA_3
Transcriptional regulator, AraC family; COG: COG2207; Pfam: PF02311,PF00165; InterPro: IPR000005.
 
  
0.426
cobB
Transcriptional regulator, Sir2 family; COG: COG0846; Pfam: PF02146; InterPro: IPR003000; Belongs to the sirtuin family. Class III subfamily.
  
  
 0.419
BvgS_2
PAS domain S-box protein; COG: COG0642; Pfam: PF08448,PF00512,PF02518,PF00072; InterPro: IPR003594.
  
  
 0.415
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.