STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
agaSSugar isomerase, AgaS family; COG: COG2222; Pfam: PF01380. (400 aa)    
Predicted Functional Partners:
agaZ
D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; COG: COG4573; Pfam: PF08013; InterPro: IPR012062.
 
  
 0.963
EFE95273.1
Putative membrane protein; Pfam: PF00892.
 
     0.872
fba
Class II aldolase, tagatose bisphosphate family; COG: COG0191; Pfam: PF01116; InterPro: IPR013785.
 
  
 0.816
EFE95274.1
BadF/BadG/BcrA/BcrD ATPase family protein; COG: COG2971; Pfam: PF01869; InterPro: IPR002731.
 
   
 0.804
manX
PTS system, mannose/fructose/sorbose family, IIB component; COG: COG3444; Pfam: PF03610,PF03830; InterPro: IPR004720.
 
  
 0.777
nagA
N-acetylglucosamine-6-phosphate deacetylase; COG: COG1820; Pfam: PF01979; InterPro: IPR003764.
 
 
 0.766
ptpC
PTS system sorbose-specific iic component; COG: COG3715; Pfam: PF03609; InterPro: IPR004700.
 
  
 0.759
ptnD
PTS system mannose/fructose/sorbose family IID component; COG: COG3716; Pfam: PF03613; InterPro: IPR004704.
 
  
 0.649
srlR2
Transcriptional regulator, DeoR family; COG: COG1349; Pfam: PF08220,PF00455; InterPro: IPR014036.
 
    0.633
manY
Mannose permease IIC component; COG: COG3715; Pfam: PF03609; InterPro: IPR004700.
 
  
 0.595
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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