STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YtcD_2Transcriptional regulator, HxlR family; COG: COG1733; Pfam: PF01638; InterPro: IPR002577. (108 aa)    
Predicted Functional Partners:
YybR_1
Transcriptional regulator, HxlR family; COG: COG1733; Pfam: PF01638; InterPro: IPR002577.
  
     0.774
YybR_5
Transcriptional regulator, HxlR family; COG: COG1733; Pfam: PF01638; InterPro: IPR002577.
  
     0.729
YybR_2
Transcriptional regulator, HxlR family; COG: COG1733; Pfam: PF01638; InterPro: IPR002577.
  
     0.547
NadR_1
Nicotinamide-nucleotide adenylyltransferase; COG: COG3172; Pfam: PF01381; InterPro: IPR006417.
   
    0.518
adh3
GroES-like protein; COG: COG1064; Pfam: PF08240,PF00107; InterPro: IPR002085.
       0.511
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.