STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DdpC_1ABC transporter, permease protein; COG: COG1173; Pfam: PF00528; InterPro: IPR000515. (296 aa)    
Predicted Functional Partners:
GsiA_4
Putative phosphonate C-P lyase system protein PhnK; COG: COG1123; Pfam: PF00005; InterPro: IPR003593.
  
 0.972
DppB_2
ABC transporter, permease protein; COG: COG0601; Pfam: PF00528; InterPro: IPR000515.
  
 0.965
GsiB_1
ABC transporter substrate binding protein, KPN_01854 family; COG: COG0747; Pfam: PF00496; InterPro: IPR000914.
 
 0.962
oppD2
ABC transporter, ATP-binding protein; COG: COG0444; Pfam: PF00005,PF08352; InterPro: IPR003593; Belongs to the ABC transporter superfamily.
  
 0.874
LuxA_2
Hypothetical protein.
 
     0.872
EFE95320.1
Alkylhydroperoxidase domain protein, Avi_7169 family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
     0.869
dppD
ABC transporter, ATP-binding protein; COG: COG0444; Pfam: PF00005,PF08352; InterPro: IPR003593; Belongs to the ABC transporter superfamily.
  
 0.864
GsiA_13
ABC transporter, ATP-binding protein; COG: COG0444; Pfam: PF00005,PF08352; InterPro: IPR003593.
  
 0.861
nikD
ABC transporter, ATP-binding protein; COG: COG0444; Pfam: PF00005,PF08352; InterPro: IPR003593.
  
 0.859
dppD3
ABC transporter, ATP-binding protein; COG: COG0444; Pfam: PF00005; InterPro: IPR003593.
  
 0.859
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.