STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GalR_4Transcriptional regulator, LacI family; COG: COG1609; Pfam: PF00356; InterPro: IPR000843. (306 aa)    
Predicted Functional Partners:
purR2
Transcriptional regulator, LacI family; COG: COG1609; Pfam: PF00356,PF00532.
  
     0.773
malI-2
Maltose regulon regulatory protein MalI; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR001761.
  
     0.773
scrR
D-fructose-responsive transcription factor; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR012781.
  
     0.772
treR
Trehalose operon repressor; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR012771.
  
     0.768
purR3
Putative bacteriochlorophyll 4-vinyl reductase; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR000843.
  
     0.767
gntR-2
HTH-type transcriptional regulator GntR; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR001761.
  
     0.764
DegA_2
Hypothetical protein; COG: COG1609.
  
     0.758
EFE94454.1
Transcriptional regulator, LacI family; COG: COG1609; Pfam: PF00356,PF00532; InterPro: IPR000843; overlaps another CDS with the same product name.
  
     0.758
CytR_3
Hypothetical protein; COG: COG1609.
  
     0.754
cscR
Sugar-binding domain protein; COG: COG1609; Pfam: PF00532; InterPro: IPR001761; overlaps another CDS with the same product name.
  
     0.725
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.