STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SglTTransporter, SSS family; Pfam: PF00474; InterPro: IPR001734; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (493 aa)    
Predicted Functional Partners:
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
  
  
 0.980
ndeD
Amidohydrolase family protein; COG: COG3653; Pfam: PF07969,PF07908; InterPro: IPR013108.
 
     0.804
dgoK-2
2-dehydro-3-deoxygalactonokinase; COG: COG3734; Pfam: PF05035; InterPro: IPR007729.
       0.778
dgoA2
2-dehydro-3-deoxy-6-phosphogalactonate aldolase; COG: COG0800; Pfam: PF01081; InterPro: IPR013785.
       0.778
EFE95332.1
Hypothetical protein; COG: COG3616.
 
     0.763
agr_PAT
Endoribonuclease L-PSP; COG: COG0251; Pfam: PF01042; InterPro: IPR013813.
 
    0.626
BvgS_2
PAS domain S-box protein; COG: COG0642; Pfam: PF08448,PF00512,PF02518,PF00072; InterPro: IPR003594.
  
 
 0.595
uca
Urea carboxylase; COG: COG0439; Pfam: PF00289,PF02786,PF02785,PF02626,PF02682,PF00364; InterPro: IPR014084.
  
  
 0.589
cstA
Carbon starvation protein CstA; COG: COG1966; Pfam: PF02554; InterPro: IPR003706.
  
    0.524
cstA2
Carbon starvation protein CstA; COG: COG1966; Pfam: PF02554; InterPro: IPR003706.
  
    0.524
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.