STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoK-22-dehydro-3-deoxygalactonokinase; COG: COG3734; Pfam: PF05035; InterPro: IPR007729. (296 aa)    
Predicted Functional Partners:
dgoA2
2-dehydro-3-deoxy-6-phosphogalactonate aldolase; COG: COG0800; Pfam: PF01081; InterPro: IPR013785.
 
  
 0.992
eda
2-dehydro-3-deoxy-6-phosphogalactonate aldolase; COG: COG0800; Pfam: PF02581; InterPro: IPR013785.
 
  
 0.974
dgoD
Mandelate racemase/muconate lactonizing enzyme, N-terminal domain protein; Catalyzes the dehydration of D-galactonate to 2-keto-3-deoxy- D-galactonate.
 
 0.969
dgoK
2-dehydro-3-deoxygalactonokinase; COG: COG3734; Pfam: PF05035; InterPro: IPR007729.
  
  
 
0.906
SglT
Transporter, SSS family; Pfam: PF00474; InterPro: IPR001734; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.778
dgoR
FCD domain protein; COG: COG2186; Pfam: PF00392,PF07729; InterPro: IPR011711.
  
 0.678
ndeD
Amidohydrolase family protein; COG: COG3653; Pfam: PF07969,PF07908; InterPro: IPR013108.
       0.553
agr_PAT
Endoribonuclease L-PSP; COG: COG0251; Pfam: PF01042; InterPro: IPR013813.
       0.524
rspA
Starvation-sensing protein RspA; COG: COG4948; Pfam: PF02746,PF01188; InterPro: IPR001354.
  
 0.493
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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