STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoA22-dehydro-3-deoxy-6-phosphogalactonate aldolase; COG: COG0800; Pfam: PF01081; InterPro: IPR013785. (198 aa)    
Predicted Functional Partners:
dgoK-2
2-dehydro-3-deoxygalactonokinase; COG: COG3734; Pfam: PF05035; InterPro: IPR007729.
 
  
 0.992
dgoK
2-dehydro-3-deoxygalactonokinase; COG: COG3734; Pfam: PF05035; InterPro: IPR007729.
 
  
 0.966
fba
Class II aldolase, tagatose bisphosphate family; COG: COG0191; Pfam: PF01116; InterPro: IPR013785.
    
 0.906
eda
2-dehydro-3-deoxy-6-phosphogalactonate aldolase; COG: COG0800; Pfam: PF02581; InterPro: IPR013785.
  
  
 
0.902
agaZ
D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit; COG: COG4573; Pfam: PF08013; InterPro: IPR012062.
     
  0.900
eda-2
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; COG: COG0800; Pfam: PF01081; InterPro: IPR013785.
  
  
 
0.855
eda-3
KHG/KDPG aldolase; COG: COG0800; Pfam: PF01081; InterPro: IPR013785.
  
  
 
0.853
EFE95014.1
EF_0839/AHA_3917 family protein; Pfam: PF07071; InterPro: IPR010763.
     
  0.800
SglT
Transporter, SSS family; Pfam: PF00474; InterPro: IPR001734; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.778
kdgK2
Kinase, PfkB family; COG: COG0524; Pfam: PF00294; InterPro: IPR011611.
 
  
 0.597
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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