STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MatC_1Hypothetical protein. (246 aa)    
Predicted Functional Partners:
EFE95359.1
Hypothetical protein.
       0.791
EFE95360.1
Hypothetical protein.
  
 
 0.769
EFE95357.1
Hypothetical protein.
  
    0.746
EFE95356.1
Hypothetical protein.
       0.529
EFE93753.1
Putative phage prohead protease, HK97 family.
  
 
 0.507
EFE95361.1
Hypothetical protein.
       0.481
papC
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
  
 
 0.431
psaC
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
  
 
 0.431
fimD
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
  
 
 0.431
fimD2
Fimbrial usher protein; COG: COG3188; Pfam: PF00577; InterPro: IPR000015.
  
 
 0.431
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.