STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFE95366.1Putative membrane protein; COG: COG0697; Pfam: PF00892; InterPro: IPR000620. (275 aa)    
Predicted Functional Partners:
EFE95367.1
2-dehydropantoate 2-reductase; Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.
 
    0.754
gcvA3
LysR substrate binding domain protein; COG: COG0583; Pfam: PF00126,PF03466; InterPro: IPR005119; Belongs to the LysR transcriptional regulatory family.
 
    0.681
EFE95097.1
Hypothetical protein; Pfam: PF05488.
  
     0.547
EFE96832.1
Hypothetical protein.
  
     0.527
EFE93814.1
stearoyl-CoA 9-desaturase; Pfam: PF00487.
  
     0.481
EFE96829.1
Hypothetical protein.
 
    0.474
EFE95368.1
Hypothetical protein; COG: COG3122.
       0.451
vmtV
Phage portal protein, lambda family; COG: COG5511; Pfam: PF05136; InterPro: IPR006429.
  
     0.441
clpP-2
Endopeptidase Clp; COG: COG0740; Pfam: PF00574; InterPro: IPR001907; Belongs to the peptidase S14 family.
  
    0.417
Your Current Organism:
Serratia odorifera
NCBI taxonomy Id: 667129
Other names: S. odorifera DSM 4582, Serratia odorifera DSM 4582, Serratia odorifera str. DSM 4582, Serratia odorifera strain DSM 4582
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.